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Publications

2021

Ma KW, Niu Y, Yong J, Ordon J, Copeland C, Emonet A, Geldner N, Guan R, Stolze SC, Nakagami H, Garrido-Oter R, Schulze-Lefert P (2021) Coordination of microbe-host homeostasis by crosstalk with plant innate immunity. Nature Plants in press doi: 10.21203/rs.3.rs-69445/v1

Kremer JM, Sohrabi R, Paasch BC, Rhodes D, Thireault C, Schulze-Lefert P, Tiedje JM, He SY (2021) Peat-based gnotobiotic plant growth systems for Arabidopsis microbiome research. Nature Protocols in press doi: 10.1101/254953

Winkelmüller TM, Entila R, Anver S, Piasecka A, Song B, Dahms E, Sakakibara H, Gan X, Kulak K, Sawikowska A, Krajewski P, Tsiantis M, Garrido-Oter R, Fukushima K, Schulze-Lefert P, Laurent S, Bednarek P, Tsuda K (2021) Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species. The Plant Cell doi: 10.1093/plcell/koab073

Mahdi LK, Miyauchi S, Uhlmann C, Garrido-Oter R, Langen G, Wawra S, Niu Y, Robertson-Albertyn S, Bulgarelli D, Parker JE, Zuccaro A The fungal root endophyte Serendipita vermifera displays inter-kingdom synergistic beneficial effects with the microbiota in Arabidopsis thaliana and barley BioRxiv doi:10.1101/2021.03.18.435831

Siani R, Stabl G, Gutjahr C, Schloter M, Radl V Acidovorax pan-genome reveals specific functional traits for plant beneficial and pathogenic plant-associations BioRxiv doi: 10.1101/2021.01.29.428753

Sommer A, Wenig M, Knappe C, Kublik S, Fösel B, Schloter M, Vlot AC (2021) Induced systemic resistance impacts the phyllosphere microbiome through plant-microbe-microbe interactions. BioRxiv doi: 10.1101/2021.01.13.426583

Eitzen K, Sengupta P, Kroll S, Kemen E, Doehlemann G (2021) A fungal member of the Arabidopsis thaliana phyllosphere antagonizes Albugo laibachii via a GH25 lysozyme. eLife 10:e65306 

Zhang J, Liu YX, Guo X, QinY, Garrido-Oter R, Schulze-Lefert P, Bai Y (2021) High-throughput cultivation and identification of bacteria from the plant root microbiota. Nature Protocols doi: 10.1038/s41596-020-00444-7

Jacoby RP, Koprivova A, Kopriva S (2021) Pinpointing secondary metabolites that shape the composition and function of the plant microbiome. Journal of Experimental Botany doi: 101093/jxb/eraa424

Chen L, Schwier M, Krumbach J, Kopriva S, Jacoby RP (2021) Metabolomics in plant-microbe interactions in the roots. Advances in Botanical Research Vol. 98: Plant Metabolomics. Elsevier in press

2020

Koprivova A, Volz V, Kopriva S (2020) Shoot-root interaction in control of camalexin exudation in Arabidopsis. bioRxiv 2020.12.15.422875; doi: 10.1101/2020.12.15.422875

Shimasaki T, Masuda S, Garrido-Oter R, Kawasaki T, Aoki Y, Shibata A, Suda W, Shirasu K, Yazaki K, Nakano RT, Sugiyama A Species-specific assembly of root-associated bacterial microbiota mediated by a combination of plant specialized metabolites bioRxiv 2020.09.25.313031; doi: 10.1101/2020.09.25.313031

Vlot AC, Sales JH, Lenk M, Bauer K, Brambilla A, Sommer A, Chen Y, Wenig M, Nayem S (2020) Systemic propagation of immunity in plants. New Phytologist doi: 10.1111/nph.16953

Nobori T*, Wang Y*, Wu J, Stolze SC, Tsuda Y, Finkemeier I, Nakagami H, Tsuda K (2020) Multidimensional gene regulatory landscape of a bacterial pathogen in plants. Nature Plants doi: 10.1038/s41477-020-0690-7 *indicates joint first authors

Regalado J​*, Lundberg DS​*, Deusch O, Kersten S, Karasov TL​, Poersch K, Shirsekar G, Weigel D (2020) Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves. ISME Journal doi: 10.1038/s41396-020-0665-8 *indicates joint first authors

Karasov TL, Neumann M, Duque-Jaramillo A, Kersten S, Bezrukov I, Schröppel B, Symeonidi E,  Lundberg DS, Regalado J, Shirsekar G, Bergelson J, Weigel D (2020) The relationship between microbial population size and disease in the Arabidopsis thaliana phyllosphere. bioRxiv doi: 10.1101/828814v2

Jacoby RP, Chen L, Schwier M, Koprivova A, Kopriva S (2020) Recent advances in the role of plant metabolites in shaping the root microbiome. F1000Res. 2020; 9: F1000 Faculty Rev-151

Koprivova A, Schmalenberger A, Kopriva S (2020) Sulfatase Assay to Determine Influence of Plants on Microbial Activitiy in Soil. Bio-protocol doi: 10.21769/BioProtoc.3490

Thiergart T, Durán P, Ellis T, Vannier N, Garrido-Oter R, Roux F, Alonso-Blanco C, Ågren J, Schulze-Lefert P, Hacquard S (2020) Root microbiota assembly and adaptive differentiation among European Arabidopsis populations. Nature Ecology & Evolution 4:122-131, doi:10.1038/s41559-019-1063-3

2019

Rodriguez PA, Rothballer M, Chowdhury SP, Nussbaumer T, Gutjahr C, Falter-Braun P (2019) Systems Biology of Plant-Microbiome Interactions. Molecular Plant doi: 10.1016/j.molp.2019.05.006

Thiergart T, Zgadzaj R, Bozsóki Z, Garrido-Oter R, Radutoiu S, Schulze-Lefert P (2019) Lotus japonicus Symbiosis Genes Impact Microbial Interactions between Symbionts and Multikingdom Commensal Communities. mBio doi: 10.1128/mBio.01833-19

Koprivova A, Schuck S, Jacoby R, Klinkhammer I, Welter B, Leson L, Martyn A, Nauen J, Grabenhorst N, Mandelkow JF, Zuccaro A, Zeier J, Kopriva S (2019) Root-specific camalexin biosynthesis controls the plant growth promoting effects of multiple bacterial strains. PNAS doi: 10.1073/pnas.1818604116

Sarkar D, Rovenich H, Jeena G, Nizam S, Tissier A, Balcke GU, Mahdi L, Bonkowski M, Langen G, Zuccaro A (2019) The inconspicuous gatekeeper: endophytic Serendipita vermifera acts as extended plant protection barrier in the rhizosphere. New Phytologist doi: 10.1111/nph.15904